Not exactly apples to apples, but we had a similar situation with our SBA 504 loans. They received CD credit when they were originated, but when rates tanked a few years ago, everyone refied out of their 504 loans. The loan purpose was the same, but since the loan was no longer a 504, we did not receive credit for the refi, even though the refi benefitted the organization. Cost us about 10MM in CD loans that exam....
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All opinions are my own, not my employer's